Package: noia 0.97.3
noia: Implementation of the Natural and Orthogonal InterAction (NOIA) Model
The NOIA model, as described extensively in Alvarez-Castro & Carlborg (2007), is a framework facilitating the estimation of genetic effects and genotype-to-phenotype maps. This package provides the basic tools to perform linear and multilinear regressions from real populations (provided the phenotype and the genotype of every individuals), estimating the genetic effects from different reference points, the genotypic values, and the decomposition of genetic variances in a multi-locus, 2 alleles system. This package is presented in Le Rouzic & Alvarez-Castro (2008).
Authors:
noia_0.97.3.tar.gz
noia_0.97.3.zip(r-4.5)noia_0.97.3.zip(r-4.4)noia_0.97.3.zip(r-4.3)
noia_0.97.3.tgz(r-4.4-any)noia_0.97.3.tgz(r-4.3-any)
noia_0.97.3.tar.gz(r-4.5-noble)noia_0.97.3.tar.gz(r-4.4-noble)
noia_0.97.3.tgz(r-4.4-emscripten)noia_0.97.3.tgz(r-4.3-emscripten)
noia.pdf |noia.html✨
noia/json (API)
| # Install 'noia' in R: |
| install.packages('noia', repos = c('https://lerouzic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lerouzic/noia/issues
- effectsNames - Genetic Effects
Last updated 2 years agofrom:b46988691b. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | OK | Oct 31 2024 |
Exports:effectsNamesGeneraleffectsNamesMultilineargeneticEffectsgenNamesGPmaplinearGPmapanalysislinearRegressionmarginallocusmultilinearRegressionsimulatePopvarianceDecomposition
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Genetic Effects | effectsNames geneticEffects |
| Linear and Multilinear Genetic Regressions | linearRegression multilinearRegression |
| Genotype-to-Phenotype Mapping | GPmap |
| Noia analysis of genotype-to-phenotype (GP) maps in ideal populations | linearGPmapanalysis |
| Estimation of parameters for specific allele frequencies | image.noia.marloc marginallocus plot.noia.marloc |
| Implementation of the Natural and Orthogonal InterAction (NOIA) model | noia-package noia |
| Graphical display of genetic regressions and genotype-phenotype maps | barplot.noia.gpmap plot.noia.linear |
| Printing Genetic Regressions and GP map analyses | print.noia.common print.noia.linear print.noia.linear.gpmap print.noia.multilinear |
| Simulates a Population from a Genotype-Phenotype Map | simulatePop |
| Decomposition of Genetic Variance | print.noia.vardec varianceDecomposition |
