{
  "_id": "6a16b301acfb0bcc41d85410",
  "Package": "sra",
  "Type": "Package",
  "Title": "Selection Response Analysis",
  "Version": "0.1.4.1",
  "Date": "2024-02-14",
  "Author": "Arnaud Le Rouzic",
  "Maintainer": "Arnaud Le Rouzic\n<arnaud.le-rouzic@universite-paris-saclay.fr>",
  "URL": "https://github.com/lerouzic/sra",
  "Description": "Artificial selection through selective breeding is an\nefficient way to induce changes in traits of interest in\nexperimental populations. This package (sra) provides a set of\ntools to analyse artificial-selection response datasets. The\ndata typically feature for several generations the average\nvalue of a trait in a population, the variance of the trait,\nthe population size and the average value of the parents that\nwere chosen to breed. Sra implements two families of models\naiming at describing the dynamics of the genetic architecture\nof the trait during the selection response. The first family\nrelies on purely descriptive (phenomenological) models, based\non an autoregressive framework. The second family provides\ndifferent mechanistic models, accounting e.g. for inbreeding,\nmutations, genetic and environmental canalization, or\nepistasis. The parameters underlying the dynamics of the time\nseries are estimated by maximum likelihood. The sra package\nthus provides (i) a wrapper for the R functions mle() and\noptim() aiming at fitting in a convenient way a predetermined\nset of models, and (ii) some functions to plot and analyze the\noutput of the models.",
  "License": "GPL-2",
  "Repository": "https://lerouzic.r-universe.dev",
  "Date/Publication": "2024-02-22 08:35:12 UTC",
  "RemoteUrl": "https://github.com/lerouzic/sra",
  "RemoteRef": "HEAD",
  "RemoteSha": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-27 08:59:02 UTC",
    "User": "root"
  },
  "MD5sum": "54bc4042c62b55e19f0e99ef7a36eee8",
  "_user": "lerouzic",
  "_type": "src",
  "_file": "sra_0.1.4.1.tar.gz",
  "_fileid": "ee0077f330d5c05c93e35bc62e6e567e247d2c0c6ef8c8cf59e9b40c971397b3",
  "_filesize": 217691,
  "_sha256": "ee0077f330d5c05c93e35bc62e6e567e247d2c0c6ef8c8cf59e9b40c971397b3",
  "_created": "2026-05-27T08:59:02.000Z",
  "_published": "2026-05-27T09:01:53.515Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78042857262,
      "time": 108,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7236250857"
    },
    {
      "job": 78042857256,
      "time": 97,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7236247829"
    },
    {
      "job": 78042857105,
      "time": 68,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7236238095"
    },
    {
      "job": 78042857177,
      "time": 78,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7236240833"
    },
    {
      "job": 78042245141,
      "time": 217,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7236213851"
    },
    {
      "job": 78042857219,
      "time": 84,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7236243048"
    },
    {
      "job": 78042857192,
      "time": 66,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7236237726"
    },
    {
      "job": 78042857174,
      "time": 70,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7236238857"
    },
    {
      "job": 78042857161,
      "time": 66,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7236237980"
    }
  ],
  "_buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/lerouzic/sra",
  "_commit": {
    "id": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
    "author": "Arnaud Le Rouzic <lerouzic@egce.cnrs-gif.fr>",
    "committer": "Arnaud Le Rouzic <lerouzic@egce.cnrs-gif.fr>",
    "message": "Fixing a Warning on CRAN\n",
    "time": 1708590912
  },
  "_maintainer": {
    "name": "Arnaud Le Rouzic",
    "email": "arnaud.le-rouzic@universite-paris-saclay.fr",
    "login": "lerouzic",
    "twitter": "@ArnaudLeRouzic",
    "description": "",
    "uuid": 58432423
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "stats4",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    }
  ],
  "_owner": "lerouzic",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "lerouzic",
      "count": 1,
      "uuid": 58432423
    }
  ],
  "_userbio": {
    "uuid": 58432423,
    "type": "user",
    "name": "Arnaud Le Rouzic"
  },
  "_downloads": {
    "count": 210,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sra"
  },
  "_mentions": 14,
  "_devurl": "https://github.com/lerouzic/sra",
  "_searchresults": 20,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/sra.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/lerouzic/sra",
  "_realowner": "lerouzic",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1",
      "date": "2012-10-29"
    },
    {
      "version": "0.1.1",
      "date": "2015-01-08"
    },
    {
      "version": "0.1.3",
      "date": "2020-02-28"
    },
    {
      "version": "0.1.4",
      "date": "2023-03-08"
    },
    {
      "version": "0.1.4.1",
      "date": "2024-02-14"
    }
  ],
  "_exports": [
    "sraAutoreg",
    "sraAutoregEvolv",
    "sraAutoregHerit",
    "sraAutoregLog",
    "sraCanalization",
    "sraCanalizationOpt",
    "sraCstvar",
    "sraData",
    "sraDirepistasis",
    "sraDrift",
    "sraSelection"
  ],
  "_help": [
    {
      "page": "A-sra-package",
      "title": "Selection Response Analysis: a R package",
      "topics": [
        "sra-package",
        "sra"
      ]
    },
    {
      "page": "B_sraAutoreg",
      "title": "Descriptive models of artificial-selection responses: auto-regressive models",
      "topics": [
        "sraAutoreg",
        "sraAutoregEvolv",
        "sraAutoregHerit",
        "sraAutoregLog"
      ]
    },
    {
      "page": "C_sraMechanistic",
      "title": "Descriptive models of artificial-selection responses: quantitative genetics models",
      "topics": [
        "sraCanalization",
        "sraCanalizationOpt",
        "sraCstvar",
        "sraDirepistasis",
        "sraDrift",
        "sraMutation",
        "sraSelection"
      ]
    },
    {
      "page": "D_methods.srafit",
      "title": "Overloaded functions for \"srafit\" objects",
      "topics": [
        "AIC.srafit",
        "coef.srafit",
        "confint.srafit",
        "logLik.srafit",
        "vcov.srafit"
      ]
    },
    {
      "page": "E_plot.srafit",
      "title": "Plotting \"srafit\" objects",
      "topics": [
        "plot.srafit",
        "sraFormatlegend",
        "sraPlotlegend",
        "sraPlotMean",
        "sraPlotMeanResid",
        "sraPlotVar",
        "sraPlotVarResid"
      ]
    },
    {
      "page": "sraData",
      "title": "Generates an object of class \"sradata\", necessary to run the models provided by the sra package.",
      "topics": [
        "sraData"
      ]
    }
  ],
  "_readme": "https://github.com/lerouzic/sra/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "sra",
  "_universes": [
    "lerouzic"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:54.000Z",
      "distro": "noble",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "6a969872725b004ed64ca46337e8c8a2e5e1f1c16f60d07824479edb4bd61eff",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:48.000Z",
      "distro": "noble",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "521b0b849903ba03603f00b329c263b49c8f28538dae813b464b18707c3a121b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:22.000Z",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "07ea221e7b22ed818337f90776d11448ae07e12eab755be66a84c4be7ce2669b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:29.000Z",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "f62fc5404aecccb129bdfbc8e3fcf1c7fb041e08bb583248fcf80e4a9a4eb7a1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:45.000Z",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "c81094337f5a046c2c2871fc1125c86938f7e0f15bc59645a08604084f515298",
      "status": "success",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:10.000Z",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "8ed108f89d5c975aef4c382fe7950828caad8d5801443d906a66949142d66cdc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:14.000Z",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "c6bc7abd2927954a190e1aa8d84bad17635368af620d650b5b1a0e6cc35de4eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.4.1",
      "date": "2026-05-27T09:00:11.000Z",
      "commit": "419c4c26a244697f6913b99e6fadb05c1d402ab8",
      "fileid": "bb3d9da24306cf8cb6b0bb12616ccf091456aa8f5a058b9257047d9d2448b136",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lerouzic/actions/runs/26501313619"
    }
  ]
}